Compute time to intersect with an omop table.

Usage

addTableIntersectDays(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetDate = startDateColumn(tableName),
  order = "first",
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetDate: Target date in tableName.
order: which record is considered in case of multiple records (only required for date and days options).
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectDays(tableName = "visit_occurrence")
#> # Source:   table<og_152_1734613858> [?? x 5]
#> # Database: DuckDB v1.1.3 [unknown@Linux 6.8.0-1017-azure:R 4.4.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    2          1 1925-07-01        1936-01-22     
#>  2                    1          5 1960-05-25        1982-02-15     
#>  3                    2          8 1955-06-07        1966-12-14     
#>  4                    1          7 1974-01-25        1986-01-19     
#>  5                    2          9 1978-03-26        1979-02-02     
#>  6                    1          4 1926-06-19        1936-09-06     
#>  7                    2          3 1962-07-19        1963-09-12     
#>  8                    1          2 1986-09-26        1988-08-08     
#>  9                    2         10 1985-01-30        1990-07-26     
#> 10                    2          6 1926-02-04        1932-08-08     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <dbl>

mockDisconnect(cdm = cdm)
# }