Changelog

Source: NEWS.md

PatientProfiles 1.4.5

CRAN release: 2026-01-21

• Add new estimates count_0, count_negative, count_positive, count_not_positive, count_not_negative + percentages by @catalamarti in #825
• Restrict count and percentage to binary variables by @catalamarti in #836
• Limit x values of density estimation to .005 and .995 percentiles of the distribution by @ablack3 in #820
• Improve summariseResult examples by @catalamarti in #827
• Add message when no result is provided in summariseResult by @catalamarti in #826
• Add new estimates count_person and count_subject by @catalamarti in #828
• Fix warning when table is no cdm_table in summariseResult by @catalamarti in #835
• Standard deviation is corrected to numeric for all variables by @catalamarti in #834

PatientProfiles 1.4.4

CRAN release: 2025-10-29

• fix edge case for not present domains by @catalamarti in #815
• additional compute in intersect by @edward-burn in #817

PatientProfiles 1.4.3

CRAN release: 2025-10-01

• validate concept set names to be appropiate by @catalamarti in #806
• explicit message for order by @catalamarti in #807
• allowDuplicated documentation by @catalamarti in #805
• Support local datasets by @catalamarti in #810
• Deprecate mockDisconnect by @catalamarti in #811

PatientProfiles 1.4.2

CRAN release: 2025-07-09

• Allow NA values with density estimate by @catalamarti in #795

PatientProfiles 1.4.1

CRAN release: 2025-06-27

• Fix pass type in expression by @edward-burn in #794

PatientProfiles 1.4.0

CRAN release: 2025-05-30

• Fix readme lifecycle badge by @catalamarti in #778
• create new function addConceptName by @catalamarti in #783
• Support visit domain and drop non supported concepts in addConceptIntersect by @catalamarti in #784
• Collect in SummariseResult if median is asked in a sql server by @catalamarti in #789
• arrange strata in summariseResult by @catalamarti in #790
• Improve performance of .addIntersect by @catalamarti in #788

PatientProfiles 1.3.1

CRAN release: 2025-03-05

• Validate cohort using class by @catalamarti in #773
• Use case_when in addCategories by @catalamarti in #774
• Fix binary counts in db by @catalamarti in #775

PatientProfiles 1.3.0

CRAN release: 2025-02-26

• Changed addCategories by @KimLopezGuell in #734
• conceptSet allows conceptSetExpression by @catalamarti in #743
• account for integer64 counts by @catalamarti in #745
• add inObservation argument in addTable… by @catalamarti in #749
• addConceptIntersectField by @catalamarti in #747
• validate targetCohortId with og by @catalamarti in #750
• create filterInObservation by @catalamarti in #744
• create filterCohortId by @catalamarti in #748
• add benchmarkPatientProfiles by @catalamarti in #752
• Update addIntersect.R by @catalamarti in #758
• Reduce addDemographics computing time by @catalamarti in #759
• Reduce addIntersect computing time by @catalamarti in #761 #762 #764 #763
• preserve field type and add allowDuplicates arg by @catalamarti in #765
• Add weights argument to summariseResult by @nmercadeb in #733
• Increase test coverage by @catalamarti in #768

PatientProfiles 1.2.3

CRAN release: 2024-12-12

• Bug fix to correct NA columns when not in observation by @catalamarti

PatientProfiles 1.2.2

CRAN release: 2024-11-28

• Update links and codecoverage by @catalamarti
• Distinct individuals in addObservationPeriodId() by @martaalcalde
• Remove dependencies on visOmopResults and magrittr @catalamarti

PatientProfiles 1.2.1

CRAN release: 2024-10-25

• edge case where no concept in concept table by @edward-burn
• update assertions in addDeath functions by @catalamarti
• increase test coverage by @catalamarti
• add internal compute to addInObservation by @edward-burn
• conceptIntersect inObservation argument by @edward-burn

PatientProfiles 1.2.0

CRAN release: 2024-09-11

• addObservationPeriodId() is a new function that adds the number of observation period that an observation is in.

• Add density estimate to summariseResult()

PatientProfiles 1.1.1

CRAN release: 2024-07-28

• addCohortName overwrites if there already exists a cohort_name column #680 and #682.

• Correct nan and Inf for missing values #674

• Fix #670 #671

PatientProfiles 1.1.0

CRAN release: 2024-06-11

• addConceptIntersect now includes records with missing end date under the assumption that end date is equal to start date.

• add* functions have a new argument called name to decide if we want a resultant temp table (name = NULL) or have a permanent table with a certain name. Additional functions are provided, e.g. addDemographicsQuery, where the result is not computed.

PatientProfiles 1.0.0

CRAN release: 2024-05-16

• Stable release of package