It creates a mock database for testing PatientProfiles package

Usage

mockPatientProfiles(
  connectionDetails = list(con = DBI::dbConnect(duckdb::duckdb(), ":memory:"),
    write_schema = "main", mock_prefix = NULL),
  drug_exposure = NULL,
  drug_strength = NULL,
  observation_period = NULL,
  condition_occurrence = NULL,
  visit_occurrence = NULL,
  concept_ancestor = NULL,
  person = NULL,
  death = NULL,
  cohort1 = NULL,
  cohort2 = NULL,
  drug_concept_id_size = 5,
  ancestor_concept_id_size = 5,
  condition_concept_id_size = 5,
  visit_concept_id_size = 5,
  visit_occurrence_id_size = 5,
  ingredient_concept_id_size = 1,
  drug_exposure_size = 10,
  patient_size = 1,
  min_drug_exposure_start_date = "2000-01-01",
  max_drug_exposure_start_date = "2020-01-01",
  earliest_date_of_birth = NULL,
  latest_date_of_birth = NULL,
  earliest_observation_start_date = NULL,
  latest_observation_start_date = NULL,
  min_days_to_observation_end = NULL,
  max_days_to_observation_end = NULL,
  earliest_condition_start_date = NULL,
  latest_condition_start_date = NULL,
  min_days_to_condition_end = NULL,
  max_days_to_condition_end = NULL,
  earliest_visit_start_date = NULL,
  latest_visit_start_date = NULL,
  min_days_to_visit_end = NULL,
  max_days_to_visit_end = NULL,
  seed = 1,
  ...
)

Arguments

connectionDetails: Connection an details to create the cdm mock object.
drug_exposure: default null user can define its own table.
drug_strength: default null user can define its own table.
observation_period: default null user can define its own table.
condition_occurrence: default null user can define its own table.
visit_occurrence: default null user can define its own visit_occurrence table.
concept_ancestor: the concept ancestor table.
person: default null user can define its own table.
death: default null user can define its own table
cohort1: cohort table for test to run in getindication.
cohort2: cohort table for test to run in getindication.
drug_concept_id_size: number of unique drug concept id.
ancestor_concept_id_size: the size of concept ancestor table.
condition_concept_id_size: number of unique row in the condition concept table.
visit_concept_id_size: number of unique visit concept id.
visit_occurrence_id_size: number of unique visit occurrence id.
ingredient_concept_id_size: number of unique drug ingredient concept id.
drug_exposure_size: number of unique drug exposure.
patient_size: number of unique patient.
min_drug_exposure_start_date: user define minimum drug exposure start date.
max_drug_exposure_start_date: user define maximum drug exposure start date.
earliest_date_of_birth: the earliest date of birth of patient in person table format "dd-mm-yyyy".
latest_date_of_birth: the latest date of birth for patient in person table format "dd-mm-yyyy".
earliest_observation_start_date: the earliest observation start date for patient format "dd-mm-yyyy".
latest_observation_start_date: the latest observation start date for patient format "dd-mm-yyyy".
min_days_to_observation_end: the minimum number of days of the observational integer.
max_days_to_observation_end: the maximum number of days of the observation period integer.
earliest_condition_start_date: the earliest condition start date for patient format "dd-mm-yyyy".
latest_condition_start_date: the latest condition start date for patient format "dd-mm-yyyy".
min_days_to_condition_end: the minimum number of days of the condition integer.
max_days_to_condition_end: the maximum number of days of the condition integer.
earliest_visit_start_date: the earliest visit start date for patient format "dd-mm-yyyy".
latest_visit_start_date: the latest visit start date for patient format "dd-mm-yyyy".
min_days_to_visit_end: the minimum number of days of the visit integer.
max_days_to_visit_end: the maximum number of days of the visit integer.
seed: seed.
...: user self defined tibble table to put in cdm, it can input as many as the user want.

Value

cdm of the mock database following user's specifications.

Examples

# \donttest{
library(PatientProfiles)
cdm <- mockPatientProfiles()
CDMConnector::cdmDisconnect(cdm = cdm)
# }