Compute date of intersect with an omop table.

Usage

addTableIntersectDate(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetDate = startDateColumn(tableName),
  inObservation = TRUE,
  order = "first",
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetDate: Target date in tableName.
inObservation: If TRUE only records inside an observation period will be considered.
order: which record is considered in case of multiple records (only required for date and days options).
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectDate(tableName = "visit_occurrence")
#> # Source:   table<og_129_1752077351> [?? x 5]
#> # Database: DuckDB v1.3.1 [unknown@Linux 6.11.0-1015-azure:R 4.5.1/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    1          9 1980-05-20        1981-11-17     
#>  2                    2          2 1926-09-04        1927-12-31     
#>  3                    2         10 1982-12-16        1983-05-20     
#>  4                    2          3 1962-05-28        1980-10-16     
#>  5                    3          4 1923-04-19        1929-01-14     
#>  6                    1          8 1959-02-03        1966-10-01     
#>  7                    3          1 1946-08-30        1971-11-30     
#>  8                    3          6 1977-10-07        1981-03-22     
#>  9                    3          7 1972-09-13        1973-10-05     
#> 10                    1          5 1978-07-21        1996-05-05     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <date>

mockDisconnect(cdm = cdm)
# }