Compute date of intersect with an omop table.

Usage

addTableIntersectDate(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetDate = startDateColumn(tableName),
  order = "first",
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetDate: Target date in tableName.
order: which record is considered in case of multiple records (only required for date and days options).
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectDate(tableName = "visit_occurrence")
#> # Source:   table<og_145_1734613855> [?? x 5]
#> # Database: DuckDB v1.1.3 [unknown@Linux 6.8.0-1017-azure:R 4.4.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    3          3 1971-07-28        1990-03-18     
#>  2                    2          5 1950-05-02        1955-12-29     
#>  3                    1          8 1953-04-23        1957-02-13     
#>  4                    1         10 1922-12-18        1932-01-30     
#>  5                    2          7 1964-10-03        1966-09-03     
#>  6                    1          1 1948-10-15        1950-02-18     
#>  7                    3          2 1946-09-21        1963-06-21     
#>  8                    1          6 1931-12-19        1943-01-30     
#>  9                    1          9 1920-12-23        1921-07-20     
#> 10                    1          4 1945-02-03        1947-10-08     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <date>

mockDisconnect(cdm = cdm)
# }