Compute date of intersect with an omop table.

Usage

addTableIntersectDate(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetDate = startDateColumn(tableName),
  inObservation = TRUE,
  order = "first",
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetDate: Target date in tableName.
inObservation: If TRUE only records inside an observation period will be considered.
order: which record is considered in case of multiple records (only required for date and days options).
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
library(PatientProfiles)

cdm <- mockPatientProfiles(source = "duckdb")

cdm$cohort1 |>
  addTableIntersectDate(tableName = "visit_occurrence")
#> # Source:   table<og_137_1761733718> [?? x 5]
#> # Database: DuckDB 1.4.1 [unknown@Linux 6.11.0-1018-azure:R 4.5.1/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    3          9 1944-08-01        1956-11-30     
#>  2                    1          3 1920-06-11        1937-03-13     
#>  3                    1          6 1916-11-07        1917-11-11     
#>  4                    3          5 1913-02-24        1917-05-12     
#>  5                    1         10 1972-07-01        1979-02-12     
#>  6                    2          2 1954-05-02        1959-01-22     
#>  7                    1          1 1958-01-26        1962-10-08     
#>  8                    1          8 1943-09-05        1944-01-11     
#>  9                    3          7 1983-10-02        1995-04-24     
#> 10                    3          4 1915-08-27        1926-10-11     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <date>

# }