Compute number of intersect with an omop table.

Usage

addTableIntersectCount(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetStartDate = startDateColumn(tableName),
  targetEndDate = endDateColumn(tableName),
  inObservation = TRUE,
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetStartDate: Column name with start date for comparison.
targetEndDate: Column name with end date for comparison.
inObservation: If TRUE only records inside an observation period will be considered.
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
library(PatientProfiles)

cdm <- mockPatientProfiles(source = "duckdb")

cdm$cohort1 |>
  addTableIntersectCount(tableName = "visit_occurrence")
#> # Source:   table<og_120_1757798568> [?? x 5]
#> # Database: DuckDB 1.3.3-dev231 [unknown@Linux 6.11.0-1018-azure:R 4.5.1/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    2         10 1944-08-25        1949-10-04     
#>  2                    1          3 1993-05-14        1999-08-17     
#>  3                    2          8 1980-01-03        2012-07-18     
#>  4                    3          9 1938-09-20        1952-05-29     
#>  5                    1          4 1921-06-09        1928-11-17     
#>  6                    3          2 1983-08-19        1986-02-17     
#>  7                    3          7 1958-07-22        1987-04-19     
#>  8                    1          1 1944-12-21        1946-02-18     
#>  9                    1          5 1920-10-12        1930-05-01     
#> 10                    3          6 1970-06-15        1971-09-04     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <dbl>

# }