Compute number of intersect with an omop table.

Usage

addTableIntersectCount(
  x,
  tableName,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  window = list(c(0, Inf)),
  targetStartDate = startDateColumn(tableName),
  targetEndDate = endDateColumn(tableName),
  inObservation = TRUE,
  nameStyle = "{table_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
tableName: Name of the table to intersect with. Options: visit_occurrence, condition_occurrence, drug_exposure, procedure_occurrence, device_exposure, measurement, observation, drug_era, condition_era, specimen, episode.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
window: window to consider events in.
targetStartDate: Column name with start date for comparison.
targetEndDate: Column name with end date for comparison.
inObservation: If TRUE only records inside an observation period will be considered.
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

table with added columns with intersect information.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addTableIntersectCount(tableName = "visit_occurrence")
#> # Source:   table<og_123_1740755733> [?? x 5]
#> # Database: DuckDB v1.2.0 [unknown@Linux 6.8.0-1021-azure:R 4.4.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    1          2 1946-02-02        1948-06-28     
#>  2                    3          6 1965-04-21        1965-11-08     
#>  3                    2          8 1906-04-14        1908-02-09     
#>  4                    2          5 1973-01-04        1978-04-28     
#>  5                    2          9 2001-01-07        2001-10-06     
#>  6                    1          7 1924-08-24        1928-11-02     
#>  7                    2          1 1924-11-16        1926-12-23     
#>  8                    3          3 2006-10-24        2026-08-23     
#>  9                    2         10 1938-01-25        1944-05-27     
#> 10                    1          4 1920-10-16        1934-01-18     
#> # ℹ 1 more variable: visit_occurrence_0_to_inf <dbl>

mockDisconnect(cdm = cdm)
# }