Query to add demographic characteristics at a certain date
Source:R/addDemographicsQuery.R
addDemographicsQuery.Rd`r lifecycle::badge("experimental")` Same as `addDemographics()`, except query is not computed to a table.
Usage
addDemographicsQuery(
x,
indexDate = "cohort_start_date",
age = TRUE,
ageName = "age",
ageMissingMonth = 1,
ageMissingDay = 1,
ageImposeMonth = FALSE,
ageImposeDay = FALSE,
ageGroup = NULL,
missingAgeGroupValue = "None",
sex = TRUE,
sexName = "sex",
missingSexValue = "None",
priorObservation = TRUE,
priorObservationName = "prior_observation",
priorObservationType = "days",
futureObservation = TRUE,
futureObservationName = "future_observation",
futureObservationType = "days",
dateOfBirth = FALSE,
dateOfBirthName = "date_of_birth"
)Arguments
- x
Table with individuals in the cdm.
- indexDate
Variable in x that contains the date to compute the demographics characteristics.
- age
TRUE or FALSE. If TRUE, age will be calculated relative to indexDate.
- ageName
Age variable name.
- ageMissingMonth
Month of the year assigned to individuals with missing month of birth.
- ageMissingDay
day of the month assigned to individuals with missing day of birth.
- ageImposeMonth
TRUE or FALSE. Whether the month of the date of birth will be considered as missing for all the individuals.
- ageImposeDay
TRUE or FALSE. Whether the day of the date of birth will be considered as missing for all the individuals.
- ageGroup
if not NULL, a list of ageGroup vectors.
- missingAgeGroupValue
Value to include if missing age.
- sex
TRUE or FALSE. If TRUE, sex will be identified.
- sexName
Sex variable name.
- missingSexValue
Value to include if missing sex.
- priorObservation
TRUE or FALSE. If TRUE, days of between the start of the current observation period and the indexDate will be calculated.
- priorObservationName
Prior observation variable name.
- priorObservationType
Whether to return a "date" or the number of "days".
- futureObservation
TRUE or FALSE. If TRUE, days between the indexDate and the end of the current observation period will be calculated.
- futureObservationName
Future observation variable name.
- futureObservationType
Whether to return a "date" or the number of "days".
- dateOfBirth
TRUE or FALSE, if true the date of birth will be return.
- dateOfBirthName
dateOfBirth column name.
Examples
# \donttest{
library(PatientProfiles)
cdm <- mockPatientProfiles()
cdm$cohort1 |>
addDemographicsQuery()
#> # Source: SQL [?? x 8]
#> # Database: DuckDB v1.3.1 [unknown@Linux 6.11.0-1015-azure:R 4.5.1/:memory:]
#> cohort_definition_id subject_id cohort_start_date cohort_end_date age sex
#> <int> <int> <date> <date> <int> <chr>
#> 1 3 1 1947-10-16 1960-06-03 0 Male
#> 2 3 2 1912-02-15 1919-08-29 8 Male
#> 3 2 3 1962-10-15 1962-11-03 30 Male
#> 4 1 4 1956-10-16 1966-09-14 8 Male
#> 5 1 5 1951-07-26 1973-09-17 4 Male
#> 6 1 6 1977-10-28 1989-09-22 6 Fema…
#> 7 3 7 1925-09-09 1930-06-29 3 Male
#> 8 3 8 1953-04-23 1954-06-20 39 Fema…
#> 9 1 9 1971-12-11 1980-08-17 4 Male
#> 10 2 10 1978-06-15 1998-04-29 16 Male
#> # ℹ 2 more variables: prior_observation <int>, future_observation <int>
mockDisconnect(cdm = cdm)
# }