It creates columns to indicate the number of days between the current table and a target cohort

Usage

addCohortIntersectDays(
  x,
  targetCohortTable,
  targetCohortId = NULL,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  targetDate = "cohort_start_date",
  order = "first",
  window = c(0, Inf),
  nameStyle = "{cohort_name}_{window_name}",
  name = NULL,
  type = "numeric"
)

Arguments

x: A table containing individuals in a CDM reference.
targetCohortTable: Name of the cohort table to intersect with.
targetCohortId: Cohort definition IDs to include from targetCohortTable. If NULL, all cohorts are included.
indexDate: Name of a date column in x, or a single date to use for all rows, used as the reference date.
censorDate: Date or name of a date column in x on which to censor follow-up. If NULL, no censoring is applied.
targetDate: Name or names of date columns in the target tables to use for the intersection.
order: Which record to use when multiple records occur in a window: "first" or "last".
window: Window or windows of time relative to indexDate to consider.
nameStyle: Naming pattern for the added column or columns. It should include the required formatting variables. If more than one tableName is provided, it must include {table_name}.
name: Name of the new table. If NULL, a temporary table is returned.
type: Type of the created column(s). Counts, days, age, and observation durations can be "numeric" or "integer". Flag columns can also be "logical". Field columns can use "auto" to preserve the source type, or can be converted to "numeric", "integer", "logical", or "character".

Value

x along with additional columns for each cohort of interest.

Examples

# \donttest{
library(PatientProfiles)

cdm <- mockPatientProfiles(source = "duckdb")

cdm$cohort1 |>
  addCohortIntersectDays(targetCohortTable = "cohort2")
#> # A query:  ?? x 7
#> # Database: DuckDB 1.5.4 [unknown@Linux 6.17.0-1020-azure:R 4.6.1/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    2          7 1972-02-01        1977-12-17     
#>  2                    3          3 1985-07-10        1990-12-20     
#>  3                    2          1 1952-09-13        1963-01-20     
#>  4                    2          9 1972-06-24        1981-08-05     
#>  5                    3         10 1973-10-10        1976-06-01     
#>  6                    1          4 1990-03-02        1999-04-29     
#>  7                    2          5 1996-07-06        1999-01-18     
#>  8                    2          8 1945-07-29        1947-06-30     
#>  9                    3          6 1918-01-04        1938-01-20     
#> 10                    3          2 1966-01-05        1966-08-17     
#> # ℹ 3 more variables: cohort_1_0_to_inf <dbl>, cohort_3_0_to_inf <dbl>,
#> #   cohort_2_0_to_inf <dbl>

# }