It creates columns to indicate the number of days between the current table and a target cohort

Usage

addCohortIntersectDays(
  x,
  targetCohortTable,
  targetCohortId = NULL,
  indexDate = "cohort_start_date",
  censorDate = NULL,
  targetDate = "cohort_start_date",
  order = "first",
  window = c(0, Inf),
  nameStyle = "{cohort_name}_{window_name}",
  name = NULL
)

Arguments

x: Table with individuals in the cdm.
targetCohortTable: Cohort table to.
targetCohortId: Cohort IDs of interest from the other cohort table. If NULL, all cohorts will be used with a days variable added for each cohort of interest.
indexDate: Variable in x that contains the date to compute the intersection.
censorDate: whether to censor overlap events at a specific date or a column date of x.
targetDate: Date of interest in the other cohort table. Either cohort_start_date or cohort_end_date.
order: date to use if there are multiple records for an individual during the window of interest. Either first or last.
window: Window of time to identify records relative to the indexDate. Records outside of this time period will be ignored.
nameStyle: naming of the added column or columns, should include required parameters.
name: Name of the new table, if NULL a temporary table is returned.

Value

x along with additional columns for each cohort of interest.

Examples

# \donttest{
cdm <- mockPatientProfiles()

cdm$cohort1 |>
  addCohortIntersectDays(targetCohortTable = "cohort2")
#> # Source:   table<og_023_1734613787> [?? x 7]
#> # Database: DuckDB v1.1.3 [unknown@Linux 6.8.0-1017-azure:R 4.4.2/:memory:]
#>    cohort_definition_id subject_id cohort_start_date cohort_end_date
#>                   <int>      <int> <date>            <date>         
#>  1                    1          7 1919-03-21        1925-01-30     
#>  2                    3          3 1965-04-19        1977-09-17     
#>  3                    1          6 1935-07-19        1982-03-27     
#>  4                    2          2 1974-01-19        1976-01-31     
#>  5                    3          9 1971-12-31        1973-05-13     
#>  6                    1          1 1934-07-19        1949-06-19     
#>  7                    1         10 1975-01-12        1977-07-09     
#>  8                    1          5 1983-08-29        1991-03-27     
#>  9                    3          8 1906-06-10        1916-04-08     
#> 10                    1          4 1957-02-02        1958-05-19     
#> # ℹ 3 more variables: cohort_3_0_to_inf <dbl>, cohort_1_0_to_inf <dbl>,
#> #   cohort_2_0_to_inf <dbl>

mockDisconnect(cdm = cdm)
# }