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[Experimental]

Usage

tableCharacteristics(
  result,
  type = "gt",
  header = c("cdm_name", "cohort_name"),
  groupColumn = character(),
  hide = c(additionalColumns(result), settingsColumns(result)),
  style = "default",
  .options = list()
)

Arguments

result

A summarised_result object.

type

Type of table. Check supported types with visOmopResults::tableType().

header

Columns to use as header. See options with availableTableColumns(result).

groupColumn

Columns to group by. See options with availableTableColumns(result).

hide

Columns to hide from the visualisation. See options with availableTableColumns(result).

style

Named list that specifies how to style the different parts of the table generated. It can either be a pre-defined style ("default" or "darwin" - the latter just for gt and flextable), NULL to get the table default style, or custom. Keep in mind that styling code is different for all table styles. To see the different styles see visOmopResults::tableStyle().

.options

A named list with additional formatting options. visOmopResults::tableOptions() shows allowed arguments and their default values.

Value

A formatted table.

Examples

# \donttest{
library(CohortCharacteristics)

cdm <- mockCohortCharacteristics()

result <- summariseCharacteristics(cdm$cohort1)
#>  adding demographics columns
#>  summarising data
#>  summarising cohort cohort_1
#>  summarising cohort cohort_2
#>  summarising cohort cohort_3
#>  summariseCharacteristics finished!

tableCharacteristics(result)
CDM name
PP_MOCK
Variable name Variable level Estimate name
Cohort name
cohort_1 cohort_2 cohort_3
Number records - N 3 2 5
Number subjects - N 3 2 5
Cohort start date - Median [Q25 - Q75] 1939-04-04 [1931-03-07 - 1962-11-03] 1956-05-23 [1952-07-16 - 1960-03-30] 1970-07-27 [1928-11-20 - 1970-12-30]
Range 1923-02-07 to 1986-06-03 1948-09-07 to 1964-02-06 1918-02-19 to 1986-06-26
Cohort end date - Median [Q25 - Q75] 1943-03-31 [1934-08-30 - 1965-04-29] 1957-10-13 [1953-11-08 - 1961-09-17] 1976-02-14 [1944-02-02 - 1995-01-09]
Range 1926-01-28 to 1987-05-28 1949-12-05 to 1965-08-21 1920-06-10 to 2002-07-14
Age - Median [Q25 - Q75] 16 [16 - 18] 15 [9 - 21] 16 [5 - 22]
Mean (SD) 16.67 (2.08) 15.00 (16.97) 13.60 (10.78)
Range 15 to 19 3 to 27 0 to 25
Sex Female N (%) 2 (66.67%) 1 (50.00%) 2 (40.00%)
Male N (%) 1 (33.33%) 1 (50.00%) 3 (60.00%)
Prior observation - Median [Q25 - Q75] 5,937 [5,726 - 6,515] 5,621 [3,483 - 7,759] 6,207 [1,875 - 8,359]
Mean (SD) 6,182.00 (816.55) 5,621.00 (6,047.18) 5,191.00 (3,995.19)
Range 5,516 to 7,093 1,345 to 9,897 207 to 9,307
Future observation - Median [Q25 - Q75] 6,601 [6,402 - 7,606] 1,005 [990 - 1,020] 3,803 [2,547 - 6,393]
Mean (SD) 7,138.67 (1,291.37) 1,005.00 (43.84) 5,330.00 (4,025.61)
Range 6,203 to 8,612 974 to 1,036 2,037 to 11,870
Days in cohort - Median [Q25 - Q75] 1,087 [724 - 1,272] 509 [482 - 536] 3,120 [1,873 - 5,553]
Mean (SD) 968.33 (558.54) 509.00 (76.37) 4,613.00 (4,322.01)
Range 360 to 1,458 455 to 563 843 to 11,676
# }