Validate cohortId argument. CohortId can either be a cohort_definition_id value, a cohort_name or a tidyselect expression referinc to cohort_names. If you want to support tidyselect expressions please use the function as: validateCohortIdArgument({{cohortId}}, cohort)
.
Source: R/validate.R
validateCohortIdArgument.Rd
Validate cohortId argument. CohortId can either be a cohort_definition_id
value, a cohort_name or a tidyselect expression referinc to cohort_names. If
you want to support tidyselect expressions please use the function as:
validateCohortIdArgument({{cohortId}}, cohort)
.
Usage
validateCohortIdArgument(
cohortId,
cohort,
null = TRUE,
validation = "error",
call = parent.frame()
)
Examples
cdm <- cdmFromTables(
tables = list(
"person" = dplyr::tibble(
person_id = c(1, 2, 3), gender_concept_id = 0, year_of_birth = 1990,
race_concept_id = 0, ethnicity_concept_id = 0
),
"observation_period" = dplyr::tibble(
observation_period_id = 1:3, person_id = 1:3,
observation_period_start_date = as.Date("2000-01-01"),
observation_period_end_date = as.Date("2023-12-31"),
period_type_concept_id = 0
)
),
cohortTables = list(
cohort = dplyr::tibble(
cohort_definition_id = 1L,
subject_id = 1L,
cohort_start_date = as.Date("2020-01-01"),
cohort_end_date = as.Date("2021-02-10")
)
),
cdmName = "mock"
)
validateCohortIdArgument(NULL, cdm$cohort)
#> [1] 1
validateCohortIdArgument(1L, cdm$cohort)
#> [1] 1
validateCohortIdArgument(2L, cdm$cohort, validation = "warning")
#> Warning: ! cohort definition id: 2 not defined in settings.
#> Warning: ! cohortId is empty.
#> integer(0)