Run benchmark of drug utilisation cohort generation

Usage

benchmarkDrugUtilisation(
  cdm,
  ingredient = "acetaminophen",
  alternativeIngredient = c("ibuprofen", "aspirin", "diclofenac"),
  indicationCohort = NULL
)

Arguments

cdm: A cdm_reference object.
ingredient: Name of ingredient to benchmark.
alternativeIngredient: Name of ingredients to use as alternative treatments.
indicationCohort: Name of a cohort in the cdm_reference object to use as indicatiomn.

Value

A summarise_result object.

Examples

# \donttest{
CDMConnector::requireEunomia()
#> ℹ `EUNOMIA_DATA_FOLDER` set to: /tmp/RtmpgjuKHN.
#> 
#> Download completed!
con <- duckdb::dbConnect(duckdb::duckdb(), CDMConnector::eunomiaDir())
#> Creating CDM database /tmp/RtmpgjuKHN/GiBleed_5.3.zip
cdm <- CDMConnector::cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

timings <- benchmarkDrugUtilisation(cdm)
#> 27-03-2025 14:39:53 Benchmark get necessary concepts
#> 27-03-2025 14:39:54 Benchmark generateDrugUtilisation
#> 27-03-2025 14:39:57 Benchmark generateDrugUtilisation with numberExposures and
#> daysPrescribed
#> 27-03-2025 14:40:01 Benchmark require
#> 27-03-2025 14:40:03 Benchmark generateIngredientCohortSet
#> 27-03-2025 14:40:09 Benchmark summariseDrugUtilisation
#> 27-03-2025 14:40:15 Benchmark summariseDrugRestart
#> 27-03-2025 14:40:17 Benchmark summariseProportionOfPatientsCovered
#> 27-03-2025 14:40:22 Benchmark summariseTreatment
#> 27-03-2025 14:40:27 Benchmark drop created tables

timings
#> # A tibble: 10 × 13
#>    result_id cdm_name group_name group_level            strata_name strata_level
#>        <int> <chr>    <chr>      <chr>                  <chr>       <chr>       
#>  1         1 Synthea  task       get necessary concepts overall     overall     
#>  2         1 Synthea  task       generateDrugUtilisati… overall     overall     
#>  3         1 Synthea  task       generateDrugUtilisati… overall     overall     
#>  4         1 Synthea  task       require                overall     overall     
#>  5         1 Synthea  task       generateIngredientCoh… overall     overall     
#>  6         1 Synthea  task       summariseDrugUtilisat… overall     overall     
#>  7         1 Synthea  task       summariseDrugRestart   overall     overall     
#>  8         1 Synthea  task       summariseProportionOf… overall     overall     
#>  9         1 Synthea  task       summariseTreatment     overall     overall     
#> 10         1 Synthea  task       drop created tables    overall     overall     
#> # ℹ 7 more variables: variable_name <chr>, variable_level <chr>,
#> #   estimate_name <chr>, estimate_type <chr>, estimate_value <chr>,
#> #   additional_name <chr>, additional_level <chr>
# }